Welcome to GenCLiP 2.0

Overview

Identifying biological functions and molecular networks in a gene list and how the genes may relate to various topics is of considerable value to biomedical researchers. Here, we present a web-based text-mining server, GenCLiP 2.0, which can analyze human genes with enriched keywords and molecular interactions. Compared with other similar tools, GenCLiP 2.0 offers two unique features: i) analysis of gene functions with free terms (i.e., any terms in the literature) generated by literature mining or provided by the user, and ii) accurate identification and integration of comprehensive molecular interactions from Medline abstracts, to construct molecular networks and sub-networks related to the free terms.

Last update: Apr 5, 2016

Citing GenCLiP 2.0

If you make use of GenCLiP 2.0, please cite:

Jia-Hong Wang, Ling-Feng Zhao, Pei Lin, Xiao-Rong Su, Shi-Jun Chen, Li-Qiang Huang, Hua-Feng Wang, Hai Zhang, Zhen-Fu Hu, Kai-Tai Yao, Zhong-Xi Huang (2014). GenCLiP 2.0: a web server for functional clustering of genes and construction of molecular networks based on free terms. Bioinformatics,30,2534-2536. (PMID: 24764463)
doi: 10.1093/bioinformatics/btu241

Comparision with other similar tools

Category
 Function
GenCLiP 2.0
STRING
CoPub 5.0
DAVID
Functional annotation
Annotation enrichment
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Cluster
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×
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Manual curation with free terms
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Gene network
Gene co-occurrence network
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Solid evidence for interaction from literature
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Construct network related to free terms
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Highlight gene related to a topic
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Other
 Mutiple species
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Search gene/protein in whole PubMed
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×
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Contact us

If you have any question/suggestion/ bug report, please send email to wjh1987@gmail.com

Enjoy the tool!