Welcome to GenCLiP 3


Identifying biological functions and molecular networks in a gene list and how the genes may relate to various topics is of considerable value to biomedical researchers. As compared with previous versions and the other similar text-mining tools, the unique characters of GenCLiP 3 are: (i) integration of CoreNLP to accurately recognize molecular interactions and their interaction polarity and directionality with Semgrex patterns from the entire PubMed database; (ii) integration of Sphinx with MySQL to support Boolean search and to quickly retrieve function-related genes from more literature sources; (iii) identification of gene related keywords by a new scoring method that considers the co-occurrence of a gene and keyword in a sentence and abstract; and (iv) daily updates following the release cycle of PubMed FTP.

More details can be seen in the paper and supplementary data.

Contact us

If you have any question/suggestion/ bug report, please send email to wjh1987@gmail.com

Enjoy the tool!